Detection of some phenolic content of Grimmia ovalis (Hedw.) Lindb. and investigation of its antimicrobial activity with molecular docking technique
Öz
This study aims to investigate the phenolic compounds and pharmacological potential of Grimmia ovalis (Hedw.) Lindb. to understand their bioactive potential and to pioneer future research. It also aims to be one of the first studies on G. ovalis's in silico bioactivity. HPLC analysis revealed the detection of some phenolic compounds in G. ovalis extract. The study revealed the in silico antimicrobial potential of some phenolic compounds. We calculated that compounds of 2,5-dihydroxybenzoic acid and caffeic acid would inhibit Staphylococcus aureus UDP-N-acetylenolpyruvylglucosamine reductase (MurB) at micromolar levels. We concluded that they interacted with residues crucial for antimicrobial activity on the mentioned macromolecule.
Anahtar Kelimeler
Bryophyte Grimmiaceae Antimicrobial Activity Phenolic Compounds Molecular Docking
Etik Beyan
The authors have no competing interest to declare regarding the content of this article.
Destekleyen Kurum
The authors declare that no funding, grant or other support was received during the preparation of this article.
Kaynakça
- Asakawa Y. Ludwiczuk A. 2018. Chemical Constituents of Bryophytes: Structures and Biological Activity. J Nat Prod. 81:3, 641-660. doi:10.1021/acs.jnatprod.6b01046.
- Barwant M. Tripathi S. 2023. Research in Mycology Series-II (Issue June). Blue Duck Publications. Srinagar.
- Benson T. E. Harris M. S. Choi G. H. Cialdella J. I. Herberg J. T. Martin J. P. Baldwin E. T. 2001. A Structural Variation for MurB: X-ray Crystal Structure of Staphylococcus aureus UDP-N-Acetylenolpyruvylglucosamine Reductase (MurB). Biochemistry. 40:8, 2340-2350. doi:10.1021/bi002162d.
- Delgadillo Moya C. 2015. Grimmia (Grimmiaceae, Bryophyta) in the Neotropics. Ciudad Universitaria, Delegación Coyoacán.
- Eberhardt J. Santos-Martins D. Tillack A. F. Forli S. 2021. AutoDock Vina 1.2. 0: New docking methods, expanded force field, and python bindings. Journal of chemical information and modeling. 61:8, 3891-3898.
- Elibol B. Ezer T. Kara R. Çelik G. Y. Çolak E. 2011. Antifungal and Antibacterial effects of some Acrocarpic Mosses. African Journal of Biotechnology. 10:6, 986-989.
- Glime J. 2007. Bryophyte ecology. Volume 1: Physiological ecology. Michigan Technological University and the International Association of Bryologists. In: Houghton.
- Hardman A. 2007. Terrestrial lichen and bryophyte communities of the Blue Mountains in Northeast Oregon.
- Henderson D. M. 1961. Contribution to the bryophyte flora of Turkey. Notes from the Royal Botanic Garden Edinburgh. 10, 279-301.
- Huey R. Morris G. M. Olson A. J. Goodsell D. S. 2007. A semiempirical free energy force field with charge‐based desolvation. Journal of computational chemistry. 28:6, 1145-1152.
- Kürschner H. Frey W. 2011. Liverworts, mosses and hornworts of southwest Asia (Marchantiophyta, Bryophyta, Anthocerotophyta). Nova Hedwigia. Beihefte, Beih. 139.
- Maestro S. 2024. Schrödinger Release 2024-3: LLC, New York, NY.
- Peters K. Gorzolka K. Bruelheide H. Neumann S. 2018. Seasonal variation of secondary metabolites in nine different bryophytes. Ecology and Evolution. 8:17, 9105-9117.
- Pirisi F. M. Cabras P. Cao C. F. Migliorini M. Muggelli M. 2000. Phenolic compounds in virgin olive oil. 2. Reappraisal of the extraction, HPLC separation, and quantification procedures. Journal of agricultural and food chemistry. 48:4, 1191-1196.
- Rios J.-L. Recio M. C. 2005. Medicinal plants and antimicrobial activity. Journal of ethnopharmacology, 100:1-2, 80-84.
- Unver T. Uslu H. Gurhan I. Goktas B. 2024. Screening of phenolic components and antimicrobial properties of Iris persica L. subsp. persica extracts by in vitro and in silico methods. Food Science & Nutrition. 12:9, 6578-6594.
- Veneziani G. Esposto S. Taticchi A. Urbani S. Selvaggini R. Sordini B. Servili M. 2018. Characterization of phenolic and volatile composition of extra virgin olive oil extracted from six Italian cultivars using a cooling treatment of olive paste. LWT. 87: 523-528.
Grimmia ovalis (Hedw.) Lindb. Türünün Bazı Fenolik Bileşiklerinin Belirlenmesi ve Moleküler Yerleştirme Tekniği ile Antimikrobiyal Aktivitesinin Araştırılması
Öz
Bu çalışma, Grimmia ovalis (Hedw.) Lindb.'in fenolik bileşenlerini ve farmakolojik potansiyelini araştırmayı, biyoaktif potansiyellerini anlamayı ve gelecekteki araştırmalara öncü olmayı amaçlamaktadır. Bununla beraber in silico biyoaktivite açısından G. ovalis üzerine yapılan ilk çalışmalardan biri olmayı hedeflemektedir. HPLC analizi, G. ovalis özütünün bazı fenolik bileşiklerinin tespitini ortaya koymuştur. Bazı fenolik bileşiklerin in silico antimikrobiyal potansiyeli ortaya çıkarılmıştır. 2,5-Dihidroksibenzoik asit ve Kafeik asit bileşiklerinin, Staphylococcus aureus UDP-N-asetilenolpiruvil glukozamin redüktaz (MurB) üzerinde mikromolar düzeyde inhibisyon yapacağı hesaplanmıştır. Bahsi geçen makromolekül üzerinde antimikrobiyal aktivite için önemli olan kalıntılar ile etkileşime girdiği sonucuna varılmıştır.
Anahtar Kelimeler
Briyofit Antimikrobiyal Aktivite Fenolik Bileşikler Moleküler Doklama
Etik Beyan
Bu araştırma, insan veya hayvan deneklerini içermemektedir ve bu nedenle etik onay gerektirmemektedir.
Destekleyen Kurum
Yazarlar, bu yazının hazırlanması sırasında herhangi bir fon, hibe veya başka bir destek alınmadığını beyan ederler.
Kaynakça
- Asakawa Y. Ludwiczuk A. 2018. Chemical Constituents of Bryophytes: Structures and Biological Activity. J Nat Prod. 81:3, 641-660. doi:10.1021/acs.jnatprod.6b01046.
- Barwant M. Tripathi S. 2023. Research in Mycology Series-II (Issue June). Blue Duck Publications. Srinagar.
- Benson T. E. Harris M. S. Choi G. H. Cialdella J. I. Herberg J. T. Martin J. P. Baldwin E. T. 2001. A Structural Variation for MurB: X-ray Crystal Structure of Staphylococcus aureus UDP-N-Acetylenolpyruvylglucosamine Reductase (MurB). Biochemistry. 40:8, 2340-2350. doi:10.1021/bi002162d.
- Delgadillo Moya C. 2015. Grimmia (Grimmiaceae, Bryophyta) in the Neotropics. Ciudad Universitaria, Delegación Coyoacán.
- Eberhardt J. Santos-Martins D. Tillack A. F. Forli S. 2021. AutoDock Vina 1.2. 0: New docking methods, expanded force field, and python bindings. Journal of chemical information and modeling. 61:8, 3891-3898.
- Elibol B. Ezer T. Kara R. Çelik G. Y. Çolak E. 2011. Antifungal and Antibacterial effects of some Acrocarpic Mosses. African Journal of Biotechnology. 10:6, 986-989.
- Glime J. 2007. Bryophyte ecology. Volume 1: Physiological ecology. Michigan Technological University and the International Association of Bryologists. In: Houghton.
- Hardman A. 2007. Terrestrial lichen and bryophyte communities of the Blue Mountains in Northeast Oregon.
- Henderson D. M. 1961. Contribution to the bryophyte flora of Turkey. Notes from the Royal Botanic Garden Edinburgh. 10, 279-301.
- Huey R. Morris G. M. Olson A. J. Goodsell D. S. 2007. A semiempirical free energy force field with charge‐based desolvation. Journal of computational chemistry. 28:6, 1145-1152.
- Kürschner H. Frey W. 2011. Liverworts, mosses and hornworts of southwest Asia (Marchantiophyta, Bryophyta, Anthocerotophyta). Nova Hedwigia. Beihefte, Beih. 139.
- Maestro S. 2024. Schrödinger Release 2024-3: LLC, New York, NY.
- Peters K. Gorzolka K. Bruelheide H. Neumann S. 2018. Seasonal variation of secondary metabolites in nine different bryophytes. Ecology and Evolution. 8:17, 9105-9117.
- Pirisi F. M. Cabras P. Cao C. F. Migliorini M. Muggelli M. 2000. Phenolic compounds in virgin olive oil. 2. Reappraisal of the extraction, HPLC separation, and quantification procedures. Journal of agricultural and food chemistry. 48:4, 1191-1196.
- Rios J.-L. Recio M. C. 2005. Medicinal plants and antimicrobial activity. Journal of ethnopharmacology, 100:1-2, 80-84.
- Unver T. Uslu H. Gurhan I. Goktas B. 2024. Screening of phenolic components and antimicrobial properties of Iris persica L. subsp. persica extracts by in vitro and in silico methods. Food Science & Nutrition. 12:9, 6578-6594.
- Veneziani G. Esposto S. Taticchi A. Urbani S. Selvaggini R. Sordini B. Servili M. 2018. Characterization of phenolic and volatile composition of extra virgin olive oil extracted from six Italian cultivars using a cooling treatment of olive paste. LWT. 87: 523-528.
Ayrıntılar
| Birincil Dil | İngilizce |
|---|---|
| Konular | Bitki Bilimi (Diğer) |
| Bölüm | Araştırma Makaleleri |
| Yazarlar | |
| Yayımlanma Tarihi | 30 Haziran 2025 |
| Gönderilme Tarihi | 23 Mayıs 2025 |
| Kabul Tarihi | 18 Haziran 2025 |
| Yayımlandığı Sayı | Yıl 2025 Cilt: 11 Sayı: 1 |
Kaynak Göster
